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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37268987_37269078_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37268987 - 37269078
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TCCATCTGACCC
Flanking Amino Acid:
LDPSHKGQTCGLCGNFNDVQ
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
46.9
-0.2
1.8
54.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258