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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37273516_37274525_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37273516 - 37274525
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAC
U12 Branch Point Sequence:
GAATGAGTAACA
Flanking Amino Acid:
HCTDGCVCPPGMVFDDINGA
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
49
-0
0.9
44.4
28.3
Major PPT
83
0.74
0.7
77.4
31.3
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
42.4
-0.5
2.4
55.63
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258