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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37274652_37274977_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37274652 - 37274977
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AGCATTATAACT
Flanking Amino Acid:
PLNWRTSELCPKSCPFNMQH
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
76.5
39.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.1
0.86
0.7
85.7
27.6
Minor 5ss
42.2
-0.9
2.8
59.5
38.1
Minor BPS
49.2
0.02
1.6
64.29
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258