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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37275195_37275527_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37275195 - 37275527
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATTTTCACT
Flanking Amino Acid:
AVLKNCSSEFASICKTVLTS
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
73.7
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
40.6
-1
3.1
59
39.5
Minor BPS
63.2
0.5
1.8
83.78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258