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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37275641_37276035_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37275641 - 37276035
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CGTTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATACTTTAACG
Flanking Amino Acid:
IPTNNEFISQNTKLTAVQFG
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.4
0.68
0.9
75.6
38.3
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
69.5
0.47
1.4
67.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258