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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37276718_37277802_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
37276718 - 37277802
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTGAACTG
5'SS Class:
weak_major
3'SS Sequence:
CCCCAGGGTTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
CCCCACTGAATT
Flanking Amino Acid:
HVIMKLEGAVMPYNHMGVLV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.2
44.5
43
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
57.3
0.17
1.1
52.4
41.3
Minor 5ss
30
-2.3
3.3
36.7
41.7
Minor BPS
47.7
-0
1.7
58.92
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258