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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37309393_37317115_F

Intron Information:

Intron Rank:
138236
Intron Class:
major
Intron Phase:
Intron Coordinates:
37309393 - 37317115
Intron Length:
7723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAGAG
5'SS Class:
major
3'SS Sequence:
AGTTCTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTTCCTCAGTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
64.5
35.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76
0.59
0.8
70.6
35.5
Minor 5ss
23.7
-3
3.1
28.4
43.8
Minor BPS
60
0.31
1.8
72.76
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024365
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044919
37308831 - 37317664
8834