About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37340088_37340781_F

Intron Information:

Intron Rank:
131696
Intron Class:
major
Intron Phase:
Intron Coordinates:
37340088 - 37340781
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
79
0.65
0.8
72.8
37.3
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
72.9
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020693
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023938
37326386 - 37340805
14420
ENSAPLT00000021427
37339724 - 37347371
7648
ENSAPLT00000020100
37339221 - 37341097
1877