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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37340919_37347097_F

Intron Information:

Intron Rank:
131698
Intron Class:
major
Intron Phase:
Intron Coordinates:
37340919 - 37347097
Intron Length:
6179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
ATACAGTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
44.3
-0.3
2.3
65.94
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020693
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021427
37339724 - 37347371
7648