About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37362250_37363176_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37362250 - 37363176
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
GTGACCTTATTT
Flanking Amino Acid:
PVKCQTTCQQGFRYVEQEGQ
Intron Amino Acid Position:
1916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.8
35.5
Major BPS
70
0.5
1
59.6
38.6
Major PPT
81.2
0.7
0.8
76
32.5
Minor 5ss
32.4
-2
2.5
38.4
39.2
Minor BPS
60.2
0.4
1.7
73.48
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927