About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37363300_37363877_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37363300 - 37363877
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
VCVSEGVEFKPGAVVPKSSC
Intron Amino Acid Position:
1875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927