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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37363919_37364532_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37363919 - 37364532
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
EDGCCPVFSCIPKGVCVSEG
Intron Amino Acid Position:
1861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.3
34.1
Major BPS
100
1.24
0.5
100
0
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
38.9
-1.3
2.7
49
34.4
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927