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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37366922_37367466_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37366922 - 37367466
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TAATGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTTTCTAACCC
Flanking Amino Acid:
DWRRQANGQCEASCARDQVY
Intron Amino Acid Position:
1688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.4
46
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69
0.43
0.9
61.7
39.5
Minor 5ss
41.6
-0.9
3.1
53.5
44.6
Minor BPS
49.5
-0
2
61.92
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927