About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37369303_37369718_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37369303 - 37369718
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATAGAGA
Flanking Amino Acid:
AMEHGKETNLILFNDKKVVP
Intron Amino Acid Position:
1503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.3
0.79
0.6
84.4
23.6
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
46.7
-0.2
2.2
64.3
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927