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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37376337_37377098_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37376337 - 37377098
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTCTG
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TGTGATGTATTT
Flanking Amino Acid:
CSLKITLIFESSEIRLLEGR
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.5
44.5
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
82.4
0.73
0.8
78
30.8
Minor 5ss
40.3
-1.1
2.7
50.3
46
Minor BPS
40.9
-0.6
2.3
60.8
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927