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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37379748_37381141_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37379748 - 37381141
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCATTTTA
5'SS Class:
major
3'SS Sequence:
ATAGATTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
CCTGTCTAAAAT
Flanking Amino Acid:
WEVPALIPEWAPMYYFNCSS
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.4
67.8
40.1
Major BPS
71.4
0.53
1
67
39.8
Major PPT
60
0.23
1.1
50.7
47
Minor 5ss
38.8
-1.3
2.8
41.9
44.6
Minor BPS
48.2
-0
1.9
63.72
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927