Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37384348_37385888_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37384348 - 37385888

Intron Length:

1541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACGTTAT

U12 Branch Point Sequence:

CGTTATTGCACC

Flanking Amino Acid:

SVVDPAVYIKKCMYDTCNAE

Intron Amino Acid Position:

619

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

38.2

Major BPS

0.25

1.2

51.4

43.9

Major PPT

76.1

0.59

0.8

69.4

36.9

Minor 5ss

-2.2

3.3

45.6

Minor BPS

44.9

-0.4

56.68

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010845

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011367

37357493 - 37400419

42927