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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37389322_37389902_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37389322 - 37389902
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
CACCTCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ATTCCTTTCACC
Flanking Amino Acid:
HGNCHYVLAKNTDDTFVVIG
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
79.5
0.66
0.8
76.3
31.9
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
63.1
0.4
1.7
74.1
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011367
37357493 - 37400419
42927