Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37409290_37409698_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

37409290 - 37409698

Intron Length:

409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGCCTC

5'SS Class:

major

3'SS Sequence:

TATAGGAAGTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTTTTTCAAGT

Flanking Amino Acid:

QDTHCNIPQSIDVFPKYLGY

Intron Amino Acid Position:

456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.1

57.2

42.1

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

-0.4

1.7

40.8

46.9

Minor 5ss

39.2

-1.2

3.2

56.5

41.9

Minor BPS

62.2

0.46

1.8

83.3

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010816

37409228 - 37417759

8532