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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37409872_37411293_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37409872 - 37411293
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCACCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TCCACCTTAACA
Flanking Amino Acid:
ECEGTCGTFSLYSVEANSLE
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
70.4
0.46
0.9
65.1
34.9
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
75.5
0.8
1.3
75.92
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010361
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010816
37409228 - 37417759
8532