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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37415169_37415814_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37415169 - 37415814
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
EDSCCPIVTCKCNTSLCTTE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010361
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010816
37409228 - 37417759
8532