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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37415993_37416146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37415993 - 37416146
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATG
Flanking Amino Acid:
CVGLDMIPREFGERFTADCQ
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.9
0.54
1
69.9
39.4
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
83.7
0.92
1.1
82.98
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010361
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010816
37409228 - 37417759
8532