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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37416179_37416342_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37416179 - 37416342
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GATATTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTATTTTGATA
Flanking Amino Acid:
SGVDVCVNTCGCVGLDMIPR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.1
0.56
0.9
68.5
41.7
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
59.6
0.29
1.2
66.7
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010361
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010816
37409228 - 37417759
8532