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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37416444_37416753_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37416444 - 37416753
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
CTCCTCTGAACA
Flanking Amino Acid:
GPSKQITCKSSQQNETAVKQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
78.8
0.65
0.9
73.5
36.2
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
58.4
0.26
1.5
65.1
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010361
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010816
37409228 - 37417759
8532