Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37461724_37462855_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37461724 - 37462855

Intron Length:

1132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTC|GTGAGTAAC

5'SS Class:

major

3'SS Sequence:

TTTTTCTCATCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATCAACT

Flanking Amino Acid:

CVFWRTPDICPIFCDYYNPP

Intron Amino Acid Position:

1097

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.44

1.3

70.2

35.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.1

0.81

0.8

86.6

26.1

Minor 5ss

32.1

-2

2.7

37.3

Minor BPS

61.4

0.43

87.17

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008123

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043100

37461521 - 37467079

5559

ENSAPLT00000008425

37456233 - 37482156

25924