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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37465048_37467066_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
37465048 - 37467066
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGGAAC
5'SS Class:
major
3'SS Sequence:
TGGAACAAGACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
ATTACTGGAACA
Flanking Amino Acid:
ENEKLGLYLVIEAS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
67.2
37.9
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
48.9
-0
1.2
40.2
42.7
Minor 5ss
31.3
-2.1
3
40.5
38.6
Minor BPS
48.8
-0
2.1
67.41
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043100
37461521 - 37467079
5559