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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37465133_37465477_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37465133 - 37465477
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCTTTTTAACT
Flanking Amino Acid:
CSKAIKMFLGNIELKLENKD
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
77.6
0.94
1.1
85.39
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924