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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37465589_37466185_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37465589 - 37466185
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
CCTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTCATTTATT
Flanking Amino Acid:
DGSCEYVATQDYCGDKNSVG
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.1
0.61
0.7
72.5
25.8
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
54.7
0.23
1.9
73.98
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924