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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37466325_37466776_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37466325 - 37466776
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TGAAAGTCAACT
Flanking Amino Acid:
GRSIAVDCNTCTCQKGVWSC
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
43.8
-0.3
2.3
64.31
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924