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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37466929_37467341_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37466929 - 37467341
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTATTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCCTTCTATT
Flanking Amino Acid:
LRCGTPQTDHYQAECVSGCV
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
73.5
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.1
0.63
0.7
77.4
31
Minor 5ss
43.8
-0.7
3.1
63.3
41.4
Minor BPS
49
0.01
1.8
69.34
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924