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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37472314_37474149_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37472314 - 37474149
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTACACA
Flanking Amino Acid:
EMTVNVPHVSASFSVFKPSS
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
49.4
-0
2.3
70.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924