About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37475372_37475672_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37475372 - 37475672
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GCTGCTATAATA
Flanking Amino Acid:
GESITNECEECTCDSGRWTC
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
80.9
0.7
0.8
75.8
32.8
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
50.5
0.01
1.7
60.35
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924