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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37478442_37480465_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37478442 - 37480465
Intron Length:
2024

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAGATGTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTCTGTACT
Flanking Amino Acid:
YLQPKLTVVDGAKTPYYSSG
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
69
38.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
23.5
-3.1
4.2
30.3
43.5
Minor BPS
61.1
0.43
1.8
81.47
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008123
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008425
37456233 - 37482156
25924