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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37589144_37605918_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37589144 - 37605918
Intron Length:
16775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
ATACCATGAATG
Flanking Amino Acid:
LEDDGRTCKSGAEEVLLLAR
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
86
0.81
0.8
77.8
36.7
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.4
-0.2
1.8
55
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008203
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008645
37588743 - 37625330
36588