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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37608171_37613004_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37608171 - 37613004
Intron Length:
4834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
IHRANLDGSFRQKVVEGSLT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.8
0.74
0.8
77.6
35.8
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008203
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008645
37588743 - 37625330
36588