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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37700102_37703324_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37700102 - 37703324
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TAGTCCTGATAC
Flanking Amino Acid:
RQACKGSAASGNHHCNWSVP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.2
0.5
0.9
69.5
36.8
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
49.7
-0
1.8
62.14
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041153
37697038 - 37717631
20594
ENSAPLT00000038410
37697038 - 37721868
24831
ENSAPLT00000028030
37697038 - 37724933
27896