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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37703577_37717540_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37703577 - 37717540
Intron Length:
13964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATATAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
49.2
0.02
2
75.16
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038410
37697038 - 37721868
24831
ENSAPLT00000028030
37697038 - 37724933
27896