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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37709600_37717540_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37709600 - 37717540
Intron Length:
7941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCTCTTTGCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.7
0.6
1
72.9
41.9
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
43.9
-0.4
1.8
57.95
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041153
37697038 - 37717631
20594