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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37717632_37724722_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37717632 - 37724722
Intron Length:
7091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACTCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTTCTTTATAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.2
35.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
39
-1.2
3
50.9
45.8
Minor BPS
63.3
0.4
1.7
73.99
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028030
37697038 - 37724933
27896