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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3775275_3776102_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3775275 - 3776102

Intron Length:

828

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TGGTGGTTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

TGATGCTCAACG

Flanking Amino Acid:

RQEMRQFFTVGESKSCLHCQ

Intron Amino Acid Position:

716

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

80.5

33.9

Major BPS

72.3

0.55

73.3

28.9

Major PPT

72.5

0.51

64.5

45.9

Minor 5ss

32.5

-2

2.7

35.6

40.5

Minor BPS

52.1

-0

2.1

61.66

45.5

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025325

3774651 - 4014215

239565