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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3776320_3778868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3776320 - 3778868

Intron Length:

2549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTATTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTGTATTAATA

Flanking Amino Acid:

MHNSNISKILGSRWKSMSNQ

Intron Amino Acid Position:

617

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.1

26.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

74.4

0.55

0.9

70.8

38.9

Minor 5ss

-1.9

3.1

41.6

Minor BPS

63.7

0.43

1.7

75.76

35.9

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025325

3774651 - 4014215

239565

ENSAPLT00000022912

3768142 - 4089655

321514

ENSAPLT00000009100

3768142 - 4089655

321514

ENSAPLT00000026177

3768142 - 4008048

239907