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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3779103_3798248_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3779103 - 3798248
Intron Length:
19146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGACATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTGCCCTGACAT
Flanking Amino Acid:
IDLTRPEDAEGSKAMNGSAA
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
70.2
0.45
1
61.4
38.6
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
47
-0.1
1.9
63.59
46

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025325
3774651 - 4014215
239565
ENSAPLT00000022912
3768142 - 4089655
321514
ENSAPLT00000009100
3768142 - 4089655
321514
ENSAPLT00000026177
3768142 - 4008048
239907