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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37806969_37816205_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37806969 - 37816205
Intron Length:
9237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
LGFQTHKMNTRFRPIKGRQE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
KMT5B
Ensembl Gene ID:
ENSAPLG00000008701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009060
37805704 - 37825992
20289