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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37820358_37822959_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37820358 - 37822959
Intron Length:
2602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCTTTACAG
Flanking Amino Acid:
NEYCECYTCERRGTGAFKSR
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
57.4
0.09
1.8
63.96
44.2

Associated Gene:

Gene:
KMT5B
Ensembl Gene ID:
ENSAPLG00000008701
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009060
37805704 - 37825992
20289