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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37856645_37860028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37856645 - 37860028
Intron Length:
3384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
TAATCACTAATC
Flanking Amino Acid:
REEQLRIDPIRGGLSNMLFQ
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
53
0.07
1.9
66.99
37.9

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477