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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37860141_37867124_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37860141 - 37867124
Intron Length:
6984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTC
Flanking Amino Acid:
LRLYGAILQMRSCNKGESVQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.62
0.8
72.8
30.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
59.2
0.27
1.8
74
37.3

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477