About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37870926_37871499_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37870926 - 37871499
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CATTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTACAG
Flanking Amino Acid:
PQGRLEEFIPSRKLSTEELS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.3
66.6
44.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.3
0.68
0.9
73.5
35.4
Minor 5ss
38.7
-1.3
3
56.4
40.7
Minor BPS
51.2
-0.1
2
64.56
42.7

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477