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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37871634_37871860_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37871634 - 37871860
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CTATTTTTAACA
Flanking Amino Acid:
EPKWLFGTMEKYLNQVLRIK
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.2
0.68
0.9
76.9
35.8
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
73.5
0.73
1.2
75.26
36.4

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477