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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37871966_37872305_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37871966 - 37872305
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAGAT
U12 Branch Point Sequence:
TTGTTGCTGACT
Flanking Amino Acid:
YNLPQEMKNLRAMLEATPSP
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
57.8
0.19
1.1
54.7
40.8
Major PPT
81.2
0.7
0.9
72.5
42.4
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
48.1
-0
2.3
75.11
42.1

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477