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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37875067_37875545_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37875067 - 37875545
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AAATTTGTAACT
Flanking Amino Acid:
VLKYPSKKQQLHFISSYLSA
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.7
0.56
0.8
65.7
36.1
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
53.7
0.2
2
71.76
39.2

Associated Gene:

Gene:
CHKA
Ensembl Gene ID:
ENSAPLG00000008912
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009283
37856325 - 37876801
20477